Monday, October 21, 2013

Why Evolution Is True: A Review

Jerry Coyne is currently a professor of biology at the University of Chicago in the Department of Ecology and Evolution. Already the author of a standard biology text Speciation (2004), Coyne set out in 2009 to publish Why Evolution Is True, a non-technical summary of the evidence supporting the theory of evolution. Coyne became interested in writing such a text while following a 2005 case, Kitzmiller et al. vs. Dover Area School District et al. Certain religiously motivated members of the Dover School Board insisted that Intelligent Design (a form of biblical creationism) be offered as an alternative to students in biology classrooms. In the ensuing controversy, two board members resigned and biology instructors in the district refused to read to students the board's resolution concerning Intelligent Design as a scientifically viable alternative to biology. Eleven parents of Dover students took the district to court based on what they saw as religious instruction in public schools and therefore a violation of the Establishment Clause of the First Amendment.


In his ruling in the Kitzmiller case, Judge John Jones III stated that while "Darwin's theory of evolution is imperfect...the fact that a scientific theory cannot yet render an explanation on every point should not be used as a pretext to thrust an untestable alternative hypothesis ground in religion into the science classroom (Coyne, xiii). " 

Although Coyne and other biologists celebrated the ruling, they understood the fight between evolutionary biology and Intelligent Design was hardly settled. Creationists are indefatigably opposed to Darwinian evolution in biology texts and classrooms without the creationist alternative pedagogy made similarly available. It was in this context that Coyne prepared his 2009 bestseller, Why Evolution Is True


Coyne first objective in this book is to explore what precisely the term "evolution" represents. Since so many aspects of evolution have become misstated and conflated (in the media especially, no doubt some of which through sophistry), Why Evolution Is True begins with a definition of what evolution purports. "Life on earth," Coyne argues, "evolved gradually beginning with one primitive species—perhaps a self-replicating molecule—that lived more than 3.5 billion years ago; it then branched out over time, throwing off many new and diverse species; and the mechanism for most (but not all) of evolutionary change is natural selection (Coyne, 3)." The formal study of evolution can be traced back to Charles Darwin's world-altering On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life (1859). Today, Darwin’s magnum opus is known more colloquially as On the Origin of Species.

19th century printing of The Origin of Species. Source: http://www.nhm.ac.uk/resources-rx/images/1015/origin-of-species-book_114888_1.jpg

Through the majority of the nineteenth century, most scientists were also creationists. At the time, being a creationist and being a life scientist (natural philosopher) was not a contrary position to hold. Enlightenment thinking had it that while God very much existed (for most thinkers), He was seen more as a Divine Clock-maker, setting the mechanisms of life in motion according to regular laws that could be understood by mankind through the faculties of reason. The beauty and regularity of the laws of natural world, according to this paradigm, gave credence to an Intelligent Designer. However, Darwin's work cleaved a divide between creationism and evolutionary science that continues today. Obviously, omnipotence cannot allow for design failure or even the gradual change of species, which would admit flaws that had to be corrected over time, or in some cases, "dead ends." Fossil finds like that of the feathered dinosaur Archaeopteryx in 1861 were were keystone findings that increased support of the Darwinist model to explain the changes in species over time. This is not the kind of evidence one expects to find in a instantly complete and "celestially" imparted creation.




Artist rendering of Archaeopteryx. Source: http://www.search4dinosaurs.com/jm_large_archeopteryx.jpg

Darwin's On the Origins of Species is significant, Coyne continues, because it "provided an alternative hypothesis for the development, diversification, and design of life (Coyne, 17)." However, Coyne concedes, the actual evidence for Darwin's theories at the time was compelling but not "completely decisive." Since Darwin’s time, the evidence for evolution has become so staggering (and tested repeatedly, in accordance with the scientific method) that it is not a matter among biologists of whether evolution is a fact or not (evolution is like gravity in this sense), but rather in how the details of evolution transpire. 

Skeletal comparison of Compsognathus, Archaeopteryx, and Gallus. From: https://pterosaurheresies.wordpress.com/2011/12/18/the-origin-of-archaeopteryx-illustrated/

So how exactly do we use Darwinian Evolution as process to describe the diversification and development of life? We do so through the process of testable predictions.  Coyne lists the six fundamental tenets of Darwinism in which the evidence of evolution can be tested:

1) Since there are fossil remains of ancient life, we should be able to find some evidence for evolutionary change in the fossil record. 
2) We should be able to find some cases of speciation in the fossil record, with one line of descent dividing into two or more.
3) We should be able to find examples of species that link together major groups suspected to have common ancestry, like birds with reptiles, and fish with amphibians.
4) We should expect that species show genetic variation for many traits (otherwise there would be no possibility of evolution happening). 
5Imperfection is the mark of evolution, not of conscious design. We should then be able to find cases of imperfect adaptation, in which evolution has not been able to achieve the same degree of optimality as would a creator [italics mine]. 
6) We should be able to see natural selection acting in the wild (Coyne, 18). 

Coyne spends the next two chapters, "Remnants: Vestiges, Embryos and Bad Design," and "The Geography of Life," to show that in fact, all six of these testable predictions have been found both in the fossil record as well as in extant animals and plant systems. Of particular significance to understanding how evolution works is to grasp the notion of what Coyne calls "chance and lawlessness," which can also be seen as the "imperfection" of the fifth tenet of testable predictions mentioned earlier. "One cannot understand evolution," Coyne writes, "without grasping its unique interaction between chance and lawlessness...an interaction that...is critically important to understanding the idea of natural selection (Coyne, 110)." Not to mention understanding evolution's confrontational juxtaposition to Intelligent Design.

And why has Intelligent Design held such inexorable sway, despite the voluminous and repeatedly tested evidence in support of evolution? The answer may be more subversive than it initially appears. “Everywhere we look in nature,” Coyne writes, “we see animals that seem beautifully designed to fit into their environment, whether that environment be the physical circumstances of life…or other organisms that every species must deal with (Coyne, 116) [italics in original].” This line of logic, however, is what was so flatly refuted, and in fact given secular explanation, by Darwin’s On the Origins of Species. The ways in which organisms seem so "intelligently” designed for the environment can be explained by the concept of natural selection.



Assorted adaptation of Galapagos Island finches collected by Charles Darwin. Source: 

“Evolution by [natural] selection,” Coyne states, “…is a combination of randomness and lawfulness. There is first a ‘random’ (or “indifferent”) process—the concurrence of mutations that generate an array of genetic variants, both good and bad; and then a ‘lawful’ process—natural selection—that orders this variation, keeping the good and winnowing the bad (Coyne, 118). So while there is “indifference” in the randomness of potential mutations, evolution is certainly not based on “chance,” a charge frequently leveled at it by creationists. A lawful filtering of the fitness of those mutations governs the success or failure of an organism in its environment. Coyne cites another famous biologist, Richard Dawkins, who defined the process of natural selection as “the non-random survival of random events (Coyne, 119).”

The process of mutation, "natural selection" and reproduction. Source: http://freethinkerperspective.blogspot.com/2012/07/how-natural-selection-selects.html

Coyne's book also examines the role of common ancestry as well as homo-sapiens position within the grander scheme of evolution. If you, Constant Reader, are truly interested in learning more about the macro processes of evolution and natural selection, you would be well served to read Why Evolution Is True, an easily accessible text intended for the general reading public. 

Source: Coyne, Jerry A. Why Evolution is True. New York: Penguin Group, 2009.


Friday, August 16, 2013

So You Think You Can Run? Try the Death Valley Badwater Ultramarathon

Referencing the geographic coordinate system, Death Valley National Park is located at 36.2419° N, 116.8258 W. Interfacing the Great Basin to the Mojave Desert, Death Valley National Park is the largest national park in the lower 48 states. Comprising over 3,000,000 acres, of which 95% is designated wilderness, Death Valley National Park contains some of the hottest, driest, and most extreme geography in the world. Temperatures in the summer time regularly top 120° F. The highest recorded temperature on earth, 134° F, was observed at the aptly named Furnace Creek section of Death Valley, in 1913.

Death Valley, CA 
From http://foundtheworld.com/wp-content/uploads/2014/06/Death-Valley-2.jpg

The Badwater Basin is the lowest point in North American at 282 feet below sea level. A mere 82 miles away sits highest summit in the contiguous United States, Mount Whitney, at 14,505 feet. Given all these remote and extreme features, it may be surprising to most that an actual marathon race is held in Death Valley every year, from Badwater to Mount Whitney. In mid-July. With no prize for first place.

Some of the world's greatest endurance runners prepare for the Badwater Ultramarathon 

Inexplicably ambulating through Death Valley

Most traditional marathons today are 26 mile (and 385 yard) races through large urban centers like London, Los Angeles, and New York. The New York City Marathon, one of the world’s largest, regularly features over 45,000 participants. The Badwater-Death Valley Marathon is a far cry from the traditional marathon. The Badwater race, heralded as the “toughest footrace in the world,” is more accurately categorized as an ultramarathon, or any marathon race beyond the traditional 26 mile limit. In the case of the Badwater Race, it is a held in the infernal desert heat of July, and features a grueling 135 mile slog from the Badwater Basin (-282 feet below sea level) to the Mount Whitney Portal (8,360 feet above sea level). In 2012, a grand total of 96 intrepid souls set out to Death Valley for a chance to win a medal (for those capable of finishing in less than 60 hours) or more brazenly, a belt buckle (for those who finish in under 48 hours). There is no award, other than notoriety, for those who finish first.


A coveted Badwater Ultramarathon belt buckle from the 2009 race

So if you are a runner who would like a real challenge, maybe you can start training for the 2014 race. After all, if you can run 135 miles through the most forbidding desert in the world for a belt-buckle, you can probably do anything. Happy trails!

Running In Death Valley
From: http://i2.cdn.turner.com/cnnnext/dam/assets/150826114949-dean-karnazes-badwater-marathon-exlarge-169.jpg






Friday, August 2, 2013

Remembering the Red October of 1917: Октя́брьская револю́ция

How was the Soviet Union formed? The answer to that complex question actualized during the chaotic year of 1917, the third full year of World War I in Europe. Russia, along with most European nations at the time, was governed by a monarchy, in this case by the person of Tsar Nicholas II, last ruler of the Russian Empire. His accumulated wealth at the time of his death would be over $250 billion in today’s currency.

Tsar Nicholas II of Russia 

Russia entered World War I (at Nicholas' behest) both to support Serbia against invasion by the Austro-Hungarian Empire, and because of their alliance with France against the presumed common enemy of Imperial Germany, who was led by Kaiser Wilhelm II. Wilhelm II was Tsar Nicholas’ cousin, who was himself cousin to King George V of Great Britain.

Nicholas II (left) and King George V (right) 

Widespread civil unrest and uneven Russian military successes on the Eastern Front, along with desertions and the catastrophic living conditions of the Russian peasantry, forced the eventual abdication of Tsar Nicholas II in March of 1917. On July 16, 1918, a revolutionary secret police unit, the Cheka (чрезвыча́йная коми́ссия), executed the Tsar and his family while they were being held prisoner in Yekaterinburg, Russia.

Russian forces during World War I 

However, prior to his execution, Tsar Nicholas’ abdication resulted in the creation of a Russian Provisional Government. Led by Aleksander Kerensky, this government declared Russia a “republic.” Alas, the Provisional Government was short lived. The Bolsheviks, led by Vladimir Lenin (a political exile who was smuggled back into Russia by the German government to foment rebellion), led the overthrow of the Provisional Government on November 5, 1917 (or October 23 in the Old Style Calendar, hence the “October Revolution”, Октя́брьская револю́ция).

Alexander Fyodorovich Kerensky, 2nd Prime Minister of the Provisional Government 

Vladimir Ilyich Lenin, founding leader of the Russian Soviet Federative Socialists Republic, 1917 (picture above dated from 1920). 

Withdrawing Russia from World War I through the Treaty of Brest-Litovsk, the Bolsheviks and their Red Army looked to consolidate power within the restive former Russian Empire, but they were drawn into a complicated and bloody civil war against Anti-Bolshevik forces and their international allies.

Victory of "The Bolshevik" by Boris Kustodiev (1920) 

Near the end of this tumultuous period, the victorious “soviet” entities elected to create a continuous political union, by way of proclamation (Договор об образовании СССР), on December 30, 1922. This entity--the first self-proclaimed socialist state in history--was known in the west as the USSR (Union of Soviet Socialist Republics). It would last nearly 70 years, until Mikhail Gorbachev, the last President of the Soviet Union, began Glasnost (гла́сность) and Perestroika (перестро́йк), or the “reformation/dissolution” of the Soviet state into the current Russian Federation.

1922-1991:



Coat of Arms of the Soviet Union 


Thursday, July 18, 2013

The Decline and Fall of Metropolitan Detroit

Detroit, seat of Wayne County and most populous city in the fine state of Michigan, is insolvent. Under the direction of Kevyn Orr, the city's appointed Emergency Manager, Detroit has filed for Chapter 9 Bankruptcy Protection, in order to restructure their debt.

Detroit 1991: photo by Camilo Jose Vergara (see Vergara's bleak photo-essay of Detroit: http://www.businessinsider.com/the-incredible-decline-of-detroit-photos-2012-10?op=1

As someone who was proudly born in Detroit, I have always rooted for the city, its economy, and its sports teams from afar. Yet, its fiscal mismanagement, crime, population decline, economic contraction, and urban decay have made today seem almost cruelly inevitable. One can only hope that Michigan Governor Rick Snyder (R) and Kevyn Orr can carefully guide the city through the worst municipal disaster in American history. The challenge stands before them on how to steer a once great city--indeed, once known as a fulcrum in the "Arsenal of Democracy"--back from the brink of collapse. Yet in a city where nearly 40%  of the streetlights do not work and hundreds of thousands of residents have fled to surrounding suburbs, the return to "normalcy" will be anything but easy. If there is such a thing as the American Spirit, it will be needed in droves in old Detroit. And please, no jokes about how Omni Consumer Products, or any of its famed employees, can save the city.

7.23.2013 UPDATE:  For an astute analysis of the stakeholders involved in the Detroit Bankruptcy, as well the larger political and market forces at work, please see David Sirota's article here.

Detroit's Monument to Joe Louis, known also as "The Fist," by Robert Graham




The Enduring Mystery of the Lost Colony at Roanoke Island

With dreams of silver and gold, the late 16th century English conceived plans to found a colony in North America. Their strategy was to build a "bridgehead" on the coast that could act both as a base to raid Spanish galleons (loaded with the aforementioned silver and gold), as well as a forward base to explore the American interior, which at that time was not thought to be particularly extensive.

Late 16th Century Map of North America
As such, Queen Elizabeth I granted Sir Walter Raleigh (himself a colorful character, who among other things, popularized tobacco usage in England) a charter to establish a colony in North America in 1584. The following year, Raleigh financed a voyage-or-bust expedition led by Sir Ralph Lane. He and 107 colonists arrived at Roanoke Island (in those days, "Virginia," today part of North Carolina's Outer Banks) in June, 1585. Conspicuously, Lane left Roanoke Island shortly thereafter with none other than Sir Francis Drake, who was stopping by the North American shore on a return trip to England.

Sir Francis Drake
From: http://a3.files.biography.com/image/upload/c_fit,cs_srgb,dpr_1.0,h_1200,q_80,w_1200/MTE5NTU2MzE2MjA1NTgxODM1.jpg

A relief group of fresh colonists was sent from England in 1587  but they found none of the previous colonists at the Roanoke Colony site, and were therefore presumed dead. These 150 colonists (including the first English person born in North America, Virginia Dare) remained at Roanoke despite a lack of supplies and random attacks from local Indians. Due to an intermittent military conflict with Spain at the time, additional relief ships were not dispatched back to Roanoke Island until 1590. When these ships arrived in August, 1590, every single colonist was gone, although, curiously--perhaps ominously--without a visible sign of struggle or attack around the colony. The only clue to their disappearance was the word "CROATOAN" carved into a nearby tree. Ever since, theories proliferated in an attempt to explain what happened to the vanished colonists.

English colonists find the "CROATOAN" carving
Croatoan was in fact the name of another small island in the Outer Banks, but the colonists were neither found there nor was there any evidence they moved there or anywhere else. One explanation given was that at least some colonists experienced immersion into local Indian tribes. These tales include early 17th century sightings of so-called blond haired, blue eyed "European" looking Indians by later colonists. A similar hypothesis is explored by the Lost Colony Research group, who strive to explain the mystery of the Roanoke Colony through DNA testing, among other methods. 

A contemporary explanation was offered by Chief Powhatan (?-1618), of the Tsenacommacah, who told English colonists several years later that his tribe wiped out the colonists because they were found to be living with the Chesepian (Chesapeake) Indians, his tribe's enemy at the time. However, no empirical evidence has been revealed to substantiate this claim.
Sketch of Chief Powhatan by Captain John Smith, 1607
Still other explanations suggest the colonists perished at sea either in an attempt to sail back to England (they did have a ship), or in an attempt to escape raiding Spanish parties. Again, no hard evidence has substantiated these claims. Other less dramatic explanations site natural phenomenon such as a hurricane or drought, although that does not explain why the structure of the colony itself was found intact--and found without sign of struggle, or corpses.

Whatever may have really happened to those first colonists remains one of the great mysteries of history to this day. Whether recently discovered map markings hold the secret or not, the Lost Colony of Roanoke continues to cast a peculiar and popular spell over England's first real foray into North America.


Friday, July 12, 2013

Zombie Snails and the Fungal Apocalypse

When video game developer Naughty Dog (through Sony Distribution) released the blockbuster The Last of Us on June 14, 2013, it was met with nearly universal critical acclaim. For the non-gamers out there, The Last of Us (TLOU) is an action-adventure survival horror game made exclusively for the Play Station 3. The player controls a man named Joel who inherits the responsibility of guiding a young girl named Ellie through a “zombie” ravaged post-apocalyptic America of 2033. Zombies and other bands of human survivors are equally dangerous.The human "resistance" in the game believes Ellie is connected to a potential cure to the global “infection.” Such is the plot. Game controllers are accessed. Buttons are pressed. Carnage ensues.

http://www.gamerbrain.net/wp-content/uploads/2013/05/the-last-of-us3.jpg

The lucrative trope of “the zombie apocalypse” in popular culture (see AMC’s The Walking Dead) shows no signs of abating. However, TLOU features a clever spin on the genesis of zombie creation. Rather than the usual runaway outbreak of a militarily designed biohazard, TLOU posits a world where humans are frighteningly turned into murderous, rabid, unthinking monsters due to a fungal infection called Cordyceps. As the game ominously suggests, the potential for zombie transformation may already exist in nature and just be waiting the right mutation to infect a human host, spread exponentially, and eventually demand Brad Pitt’s intervention. In fact, nature has already managed several “actual” zombies without the assistance of screenwriters or marketers. One such example is the Ophiocordyceps unilateralis, a kind of parasitoidal fungus which effectively render ants as zombies. The infected ant drunkenly bobs and weaves as it is forced away from its colony, up a tree, and finally onto a overhanging leaf where it unconsciously sinks its mandibles into said leaf. Here the fungus finally kills the ant and then proceeds to grows spores out of the ant's decaying remains. This really happens.


My favorite example, however, is reflected in the charmed life of Leucochloridium paradoxum. Leucochloridium is a kind of parasitic flatworm typically found inside of Succinea, or amber snails. What the Leucochloridium does is effectively turn the snail into a zombie. Once inside the snail, the Leucochloridium takes over the functioning of the snail’s brain, controlling its directional momentum and causing it to move erratically, very much like a zombie. It then fills the snail’s tentacles with moving larvae that strongly mimic the appearance of a caterpillar or grub worm, a favorite food of predatory birds. Forcing the ill-begotten snail high up into the trees where it’s easily seen by such birds, the flatworm makes the snail an easy, hapless target. The birds then unwittingly digest the snail with the flatworm and its eggs inside. Later on, the birds droppings--now filled with new flatworm larvae--are subsequently eaten by other snails, beginning the cycle anew.

Snail with parasitic infection. 
To watch a snail being taken over by this parasite is a humbling experience. Surely, no such parasite could do this to a human?

The Quasi-Immaculate Conception

Greetings people of the Inter-web! This is a proclamation regarding the providential birth of Neodarwin's Blog. This blog will be my forum for the critical analysis of human and non-human culture: music, sports, film, the arts and sciences, general news, and whatever other internet ephemera begs for my commentary.

My goal is to have a new blog up each week. Hopefully it will be an entertaining experience for you, END USER.

With that, I welcome you...to Jurassic Park...to Neodarwin's Blog!

Post Scriptus: Below is the inspiration for this blog's namesake, Charles Robert Darwin.